My Bibliography

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Herzenberg LA, De Rosa SC, Dubs JG, Roederer M, Anderson MT, Ela SW, Deresinski SC, Herzenberg LA. Glutathione deficiency is associated with impaired survival in HIV disease. Proc Natl Acad Sci U S A. 1997 Mar 4;94(5):1967-72. doi: 10.1073/pnas.94.5.1967. PubMed PMID: 9050888; PubMed Central PMCID: PMC20026.

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Roederer M, Raju PA, Mitra DK, Herzenberg LA, Herzenberg LA. HIV does not replicate in naive CD4 T cells stimulated with CD3/CD28. J Clin Invest. 1997 Apr 1;99(7):1555-64. doi: 10.1172/JCI119318. PubMed PMID: 9119999; PubMed Central PMCID: PMC507975.

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Watanabe N, De Rosa SC, Cmelak A, Hoppe R, Herzenberg LA, Roederer M. Long-term depletion of naive T cells in patients treated for Hodgkin's disease. Blood. 1997 Nov 1;90(9):3662-72. PubMed PMID: 9345051.

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Roederer M, De Rosa SC, Watanabe N, Herzenberg LA. Dynamics of fine T-cell subsets during HIV disease and after thymic ablation by mediastinal irradiation. Semin Immunol. 1997 Dec;9(6):389-96. doi: 10.1006/smim.1997.0097. Review. PubMed PMID: 9405268.

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Roederer M, De Rosa S, Gerstein R, Anderson M, Bigos M, Stovel R, Nozaki T, Parks D, Herzenberg L, Herzenberg L. 8 color, 10-parameter flow cytometry to elucidate complex leukocyte heterogeneity. Cytometry. 1997 Dec 1;29(4):328-39. doi: 10.1002/(sici)1097-0320(19971201)29:4<328::aid-cyto10>3.0.co;2-w. PubMed PMID: 9415416.

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Roederer M. Getting to the HAART of T cell dynamics. Nat Med. 1998 Feb;4(2):145-6. doi: 10.1038/nm0298-145. PubMed PMID: 9461179.

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Roederer M, Herzenberg LA. Flow Cytometry for AIDS. In: Creighton, editor. Encyclopedia of Molecular Biology New York: John Wiley & Sons, Inc.; 1999.

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Roederer M. Compensation. In: Robinson JP, Darzynkiewicz Z, Dean PN, Dressler LG, Rabinovitch PS, editors. Current Protocols in Cytometry New York: John Wiley & Sons, Inc.; 1999.

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Lorincz MC, Parente MK, Roederer M, Nolan GP, Diwu Z, Martin DI, Herzenberg LA, Wolfe JH. Single cell analysis and selection of living retrovirus vector-corrected mucopolysaccharidosis VII cells using a fluorescence-activated cell sorting-based assay for mammalian beta-glucuronidase enzymatic activity. J Biol Chem. 1999 Jan 8;274(2):657-65. doi: 10.1074/jbc.274.2.657. PubMed PMID: 9872999.

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Lee PP, Yee C, Savage PA, Fong L, Brockstedt D, Weber JS, Johnson D, Swetter S, Thompson J, Greenberg PD, Roederer M, Davis MM. Characterization of circulating T cells specific for tumor-associated antigens in melanoma patients. Nat Med. 1999 Jun;5(6):677-85. doi: 10.1038/9525. PubMed PMID: 10371507.

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Mitra DK, De Rosa SC, Luke A, Balamurugan A, Khaitan BK, Tung J, Mehra NK, Terr AI, O'Garra A, Herzenberg LA, Roederer M. Differential representations of memory T cell subsets are characteristic of polarized immunity in leprosy and atopic diseases. Int Immunol. 1999 Nov;11(11):1801-10. doi: 10.1093/intimm/11.11.1801. PubMed PMID: 10545484.

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Voehringer DW, Hirschberg DL, Xiao J, Lu Q, Roederer M, Lock CB, Herzenberg LA, Steinman L, Herzenberg LA. Gene microarray identification of redox and mitochondrial elements that control resistance or sensitivity to apoptosis. Proc Natl Acad Sci U S A. 2000 Mar 14;97(6):2680-5. doi: 10.1073/pnas.97.6.2680. PubMed PMID: 10716996; PubMed Central PMCID: PMC15989.

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Baumgarth N, Roederer M. A practical approach to multicolor flow cytometry for immunophenotyping. J Immunol Methods. 2000 Sep 21;243(1-2):77-97. doi: 10.1016/s0022-1759(00)00229-5. Review. PubMed PMID: 10986408.

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De Rosa SC, Zaretsky MD, Dubs JG, Roederer M, Anderson M, Green A, Mitra D, Watanabe N, Nakamura H, Tjioe I, Deresinski SC, Moore WA, Ela SW, Parks D, Herzenberg LA, Herzenberg LA. N-acetylcysteine replenishes glutathione in HIV infection. Eur J Clin Invest. 2000 Oct;30(10):915-29. doi: 10.1046/j.1365-2362.2000.00736.x. PubMed PMID: 11029607.

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He XS, Rehermann B, Boisvert J, Mumm J, Maecker HT, Roederer M, Wright TL, Maino VC, Davis MM, Greenberg HB. Direct functional analysis of epitope-specific CD8+ T cells in peripheral blood. Viral Immunol. 2001;14(1):59-69. doi: 10.1089/08828240151061400. PubMed PMID: 11270597.

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Komanduri KV, Donahoe SM, Moretto WJ, Schmidt DK, Gillespie G, Ogg GS, Roederer M, Nixon DF, McCune JM. Direct measurement of CD4+ and CD8+ T-cell responses to CMV in HIV-1-infected subjects. Virology. 2001 Jan 20;279(2):459-70. doi: 10.1006/viro.2000.0697. PubMed PMID: 11162802.

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De Rosa SC, Herzenberg LA, Herzenberg LA, Roederer M. 11-color, 13-parameter flow cytometry: identification of human naive T cells by phenotype, function, and T-cell receptor diversity. Nat Med. 2001 Feb;7(2):245-8. doi: 10.1038/84701. PubMed PMID: 11175858.

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Tjioe I, Legerton T, Wegstein J, Herzenberg LA, Roederer M. Phycoerythrin-allophycocyanin: a resonance energy transfer fluorochrome for immunofluorescence. Cytometry. 2001 May 1;44(1):24-9. PubMed PMID: 11309805.

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Lorincz M, Roederer M. Reporters of gene expression: enzymatic assays. Curr Protoc Cytom. 2001 May;Chapter 9:Unit 9.5. doi: 10.1002/0471142956.cy0905s06. PubMed PMID: 18770758.

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Roederer M, Moore W, Treister A, Hardy RR, Herzenberg LA. Probability binning comparison: a metric for quantitating multivariate distribution differences. Cytometry. 2001 Sep 1;45(1):47-55. doi: 10.1002/1097-0320(20010901)45:1<47::aid-cyto1143>3.0.co;2-a. PubMed PMID: 11598946.

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Roederer M, Hardy RR. Frequency difference gating: a multivariate method for identifying subsets that differ between samples. Cytometry. 2001 Sep 1;45(1):56-64. doi: 10.1002/1097-0320(20010901)45:1<56::aid-cyto1144>3.0.co;2-9. PubMed PMID: 11598947.

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Roederer M, Treister A, Moore W, Herzenberg LA. Probability binning comparison: a metric for quantitating univariate distribution differences. Cytometry. 2001 Sep 1;45(1):37-46. doi: 10.1002/1097-0320(20010901)45:1<37::aid-cyto1142>3.0.co;2-e. PubMed PMID: 11598945.

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Mengozzi M, Malipatlolla M, De Rosa SC, Herzenberg LA, Herzenberg LA, Roederer M. Naive CD4 T cells inhibit CD28-costimulated R5 HIV replication in memory CD4 T cells. Proc Natl Acad Sci U S A. 2001 Sep 25;98(20):11644-9. doi: 10.1073/pnas.211205098. Epub 2001 Sep 18. PubMed PMID: 11562498; PubMed Central PMCID: PMC58783.

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Eckstein DA, Penn ML, Korin YD, Scripture-Adams DD, Zack JA, Kreisberg JF, Roederer M, Sherman MP, Chin PS, Goldsmith MA. HIV-1 actively replicates in naive CD4(+) T cells residing within human lymphoid tissues. Immunity. 2001 Oct;15(4):671-82. doi: 10.1016/s1074-7613(01)00217-5. PubMed PMID: 11672548.

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De Rosa SC, Mitra DK, Watanabe N, Herzenberg LA, Herzenberg LA, Roederer M. Vdelta1 and Vdelta2 gammadelta T cells express distinct surface markers and might be developmentally distinct lineages. J Leukoc Biol. 2001 Oct;70(4):518-26. PubMed PMID: 11590187.

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Roederer M. Spectral compensation for flow cytometry: visualization artifacts, limitations, and caveats. Cytometry. 2001 Nov 1;45(3):194-205. doi: 10.1002/1097-0320(20011101)45:3<194::aid-cyto1163>3.0.co;2-c. PubMed PMID: 11746088.

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De Rosa SC, Roederer M. Eleven-color flow cytometry. A powerful tool for elucidation of the complex immune system. Clin Lab Med. 2001 Dec;21(4):697-712, vii. Review. PubMed PMID: 11770282.

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Mueller YM, De Rosa SC, Hutton JA, Witek J, Roederer M, Altman JD, Katsikis PD. Increased CD95/Fas-induced apoptosis of HIV-specific CD8(+) T cells. Immunity. 2001 Dec;15(6):871-82. doi: 10.1016/s1074-7613(01)00246-1. PubMed PMID: 11754810.

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Roederer M. Compensation is not dependent on signal intensity or on number of parameters. Cytometry. 2001 Dec 15;46(6):357-9. doi: 10.1002/cyto.10008. PubMed PMID: 11754206.

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Roederer M. Multiparameter FACS Analysis. In: Coligan JE, Margulies DH, Shevach EM, Strober W, Coico R, editors. Current Protocols in Immunology New York: John Wiley & Sons, Inc.; 2002.

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Shih TA, Roederer M, Nussenzweig MC. Role of antigen receptor affinity in T cell-independent antibody responses in vivo. Nat Immunol. 2002 Apr;3(4):399-406. doi: 10.1038/ni776. Epub 2002 Mar 18. PubMed PMID: 11896394.

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Mascola JR, Louder MK, Winter C, Prabhakara R, De Rosa SC, Douek DC, Hill BJ, Gabuzda D, Roederer M. Human immunodeficiency virus type 1 neutralization measured by flow cytometric quantitation of single-round infection of primary human T cells. J Virol. 2002 May;76(10):4810-21. doi: 10.1128/jvi.76.10.4810-4821.2002. PubMed PMID: 11967298; PubMed Central PMCID: PMC136170.

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Shih TA, Meffre E, Roederer M, Nussenzweig MC. Role of BCR affinity in T cell dependent antibody responses in vivo. Nat Immunol. 2002 Jun;3(6):570-5. doi: 10.1038/ni803. Epub 2002 May 20. PubMed PMID: 12021782.

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Roederer M. Multiparameter FACS analysis. Curr Protoc Immunol. 2002 Aug;Chapter 5:Unit 5.8. doi: 10.1002/0471142735.im0508s49. PubMed PMID: 18432886.

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Herzenberg LA, Parks D, Sahaf B, Perez O, Roederer M, Herzenberg LA. The history and future of the fluorescence activated cell sorter and flow cytometry: a view from Stanford. Clin Chem. 2002 Oct;48(10):1819-27. PubMed PMID: 12324512.

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Roederer M. Compensation in flow cytometry. Curr Protoc Cytom. 2002 Dec;Chapter 1:Unit 1.14. doi: 10.1002/0471142956.cy0114s22. PubMed PMID: 18770762.

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De Rosa SC, Brenchley JM, Roederer M. Beyond six colors: a new era in flow cytometry. Nat Med. 2003 Jan;9(1):112-7. doi: 10.1038/nm0103-112. PubMed PMID: 12514723.

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Perfetto S, Roederer M. Multicolor Flow Cytometry. In: Celis J, editor. Cell Biology: A Laboratory Handbook. 3rd Edition San Diego: Elsevier; 2003.

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Roederer M, Derosa SC. Multiparameter Analysis: Application to Vaccine Analysis. In: Sklar LM, editor. Flow Cytometry in Biotechnology Oxford: Oxford University Press; 2003.

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Roederer M, Derosa SC. Multiparameter Analysis: Application to Vaccine Analysis. In: Sklar LM, editor. Flow Cytometry in Biotechnology Oxford: Oxford University Press; 2003.

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Roederer M, Koup RA. Optimized determination of T cell epitope responses. J Immunol Methods. 2003 Mar 1;274(1-2):221-8. doi: 10.1016/s0022-1759(02)00423-4. PubMed PMID: 12609547.

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Brenchley JM, Karandikar NJ, Betts MR, Ambrozak DR, Hill BJ, Crotty LE, Casazza JP, Kuruppu J, Migueles SA, Connors M, Roederer M, Douek DC, Koup RA. Expression of CD57 defines replicative senescence and antigen-induced apoptotic death of CD8+ T cells. Blood. 2003 Apr 1;101(7):2711-20. doi: 10.1182/blood-2002-07-2103. Epub 2002 Nov 14. PubMed PMID: 12433688.

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Perfetto SP, Ambrozak DR, Koup RA, Roederer M. Measuring containment of viable infectious cell sorting in high-velocity cell sorters. Cytometry A. 2003 Apr;52(2):122-30. doi: 10.1002/cyto.a.10033. PubMed PMID: 12655656.

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Berhanu D, Mortari F, De Rosa SC, Roederer M. Optimized lymphocyte isolation methods for analysis of chemokine receptor expression. J Immunol Methods. 2003 Aug;279(1-2):199-207. doi: 10.1016/s0022-1759(03)00186-8. PubMed PMID: 12969561.

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Sullivan NJ, Geisbert TW, Geisbert JB, Xu L, Yang ZY, Roederer M, Koup RA, Jahrling PB, Nabel GJ. Accelerated vaccination for Ebola virus haemorrhagic fever in non-human primates. Nature. 2003 Aug 7;424(6949):681-4. doi: 10.1038/nature01876. PubMed PMID: 12904795; PubMed Central PMCID: PMC7095492.

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Betts MR, Brenchley JM, Price DA, De Rosa SC, Douek DC, Roederer M, Koup RA. Sensitive and viable identification of antigen-specific CD8+ T cells by a flow cytometric assay for degranulation. J Immunol Methods. 2003 Oct 1;281(1-2):65-78. doi: 10.1016/s0022-1759(03)00265-5. PubMed PMID: 14580882.

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Loré K, Betts MR, Brenchley JM, Kuruppu J, Khojasteh S, Perfetto S, Roederer M, Seder RA, Koup RA. Toll-like receptor ligands modulate dendritic cells to augment cytomegalovirus- and HIV-1-specific T cell responses. J Immunol. 2003 Oct 15;171(8):4320-8. doi: 10.4049/jimmunol.171.8.4320. PubMed PMID: 14530357.

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Rubio V, Stuge TB, Singh N, Betts MR, Weber JS, Roederer M, Lee PP. Ex vivo identification, isolation and analysis of tumor-cytolytic T cells. Nat Med. 2003 Nov;9(11):1377-82. doi: 10.1038/nm942. Epub 2003 Oct 5. PubMed PMID: 14528297.

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Chattopadhyay PC, Roederer M. Immunophenotyping of T-cell Subpopulations in HIV Disease. In: Coligan JE, Margulies DH, Shevach EM, Strober W, Coico R, editors. Current Protocols in Immunology New York: John Wiley & Sons, Inc.; 2004.

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Perfetto S, Derosa SC, Roederer M. Polychromatic Flow Cytometry. In: Darzynkiewicz Z, Tanke H, Roederer M, editors. Flow Cytometry San Diego: Elsevier; 2004.